bcgsc / RNA-Bloom

:hibiscus: reference-free transcriptome assembly for short and long reads
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Output error message for pooled assembly of single-end reads #54

Open kmnip opened 1 year ago

kmnip commented 1 year ago

Please report

If an input readslist file for the -pool option contains only single-end reads, stage 1 will still run to the end.

Technically, RNA-Bloom should exit with an error indicating "pooled assembly of single-end reads is not supported." I can also emphasize this (and explain why) in the readme section for -pool option: https://github.com/bcgsc/RNA-Bloom#file-format-for-the--pool-option