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bcgsc / RNA-Bloom

:hibiscus: reference-free transcriptome assembly for short and long reads
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Racon Installation #6

Closed sum732 closed 4 years ago

sum732 commented 4 years ago

Hi Ka Ming,

I am trying to install the dependecies for RNABloom, namely Racon and keep seeing following error

CMake Error at CMakeLists.txt:51 (add_subdirectory):
  The source directory

    /Research/Programs/Racon/racon-master/vendor/bioparser

  does not contain a CMakeLists.txt file.

I followed the instructions:

git clone --recursive https://github.com/lbcb-sci/racon.git racon
cd racon
mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=Release ..

I have following compilers version in my path

CMake/3.2.3-goolf-1.4.10
GCC/4.7.2

I am on a cluster and trying to install locally.

You may have some suggestions to try.

Thanks Deep

kmnip commented 4 years ago

Make sure that you are in the build directory. The error was basically saying that CMakeLists.txt wasn't found in the parent directory.

sum732 commented 4 years ago

actually I was using zip file and that does get all the subrepos that are required. so used git clone with recursive and it with some more GCC and G++ issues that I was able to resolved using cmake -DCMAKE_C_COMPILER=/somepath/gcc -DCMAKE_CXX_COMPILER=/somepath/g++ -DCMAKE_BUILD_TYPE=Release .. and make from here "https://github.com/lbcb-sci/racon/issues/23" and it worked.