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bcgsc / Trans-NanoSim

Oxford nanopore transcriptome read simulator
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Genome tools dependency #6

Closed f0t1h closed 5 years ago

f0t1h commented 5 years ago

Genome tools is used internally. But, I cannot see it in the README as a dependency.

call("gt gtf_to_gff3 -tidy -o " + outfile + ".gff3" + annot, shell=True)

http://genometools.org/

SaberHQ commented 5 years ago

Thanks for pointing out to this important thing. I will add it as a dependency. By the way, note that we are merging this tool into original NanoSim and they will be one standalone pipeline. I will announce it shortly.