add option to output ABySS-friendly graphviz

bcgsc / arks

ARCHIVED 🌈Alignment-free scaffolding of genome assemblies with 10x Genomics Chromium reads. ARCS/ARKS projects have been consolidated: https://github.com/bcgsc/arcs

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add option to output ABySS-friendly graphviz #2

Closed benvvalk closed 4 years ago

benvvalk commented 7 years ago

use original scaffold IDs for graph nodes (instead of newly generated IDs)
quote node IDs (ABySS cannot handle unquoted graphviz node IDs)

lcoombe commented 4 years ago

Addressed in ARCS/ARKS integration (https://github.com/bcgsc/arcs/pull/67)