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bcgsc / biobloom

Create Bloom filters for a given reference and then use it to categorize sequences
http://www.bcgsc.ca/platform/bioinfo/software/biobloomtools
GNU General Public License v3.0
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Add option to exclude output of certain filters #27

Closed calchoo closed 6 years ago

calchoo commented 6 years ago

Hi,

One of our use cases involves running a bunch of filters to detect non human reads in our samples. This involves running the sample with a bunch of microbial filters and a human filter. As we expect, the vast majority end up in the human bin which is of no interest in this case.

Could we get an option to exclude the hits that hit a certain filter from the output?

JustinChu commented 6 years ago

in the develop branch I added an inverse (-n) parameter, let me know if that if it works the way you want.