bcgsc / biobloom

Create Bloom filters for a given reference and then use it to categorize sequences
http://www.bcgsc.ca/platform/bioinfo/software/biobloomtools
GNU General Public License v3.0
75 stars 15 forks source link

Sdsl issue ? #32

Closed nektem closed 5 years ago

nektem commented 6 years ago

Hi, I'm just an undergraduate student dipping his toes in bioinformatics and I must make this run for an obligatory assignment.
However I have an issue that I haven't seen reported here so I am assuming there is something that I am missing something obvious. I run ./configure without any problems however when I run make I run into the following issue : The program can't seem to find the sdsl files even though I have installed them properly. How can I solve this ?

Thanks in advance !

screenshot 4

JustinChu commented 6 years ago

Yeah, that is my fault since I haven't added checks for sdsl yet in the current version: https://github.com/bcgsc/biobloom/blob/4816abe0b9f3726f4d613f719cf8157d6fb16cd5/configure.ac#L70

In the meantime, it should be fine so long as you properly install sdsl.

git clone https://github.com/simongog/sdsl-lite.git
cd sdsl-lite
sudo ./install.sh
JustinChu commented 5 years ago

Check added in master branch.