Open mmokrejs opened 3 years ago
>>> Test phase: sci-biology/btl_bloomfilter-1.2.1 Making check in Tests/AdHoc make[1]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' make BloomFilterTests ParallelFilter make[2]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize -c -o BloomFilterTests-BloomFilterTests.o `test -f 'BloomFilterTests.cpp' || echo './'`BloomFilterTests.cpp x86_64-pc-linux-gnu-g++ -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize -Wl,-O1 -Wl,--as-needed -o BloomFilterTests BloomFilterTests-BloomFilterTests.o x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize -c -o ParallelFilter-ParallelFilter.o `test -f 'ParallelFilter.cpp' || echo './'`ParallelFilter.cpp x86_64-pc-linux-gnu-g++ -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize -Wl,-O1 -Wl,--as-needed -o ParallelFilter ParallelFilter-ParallelFilter.o make[2]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' make check-TESTS make[2]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' make[3]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' ../../test-driver: line 112: 26977 Aborted (core dumped) "$@" >> "$log_file" 2>&1 FAIL: BloomFilterTests PASS: ParallelFilter ============================================================================ Testsuite summary for BLOOMFILTER 1.2.1 ============================================================================ # TOTAL: 2 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See Tests/AdHoc/test-suite.log Please report to cjustin@bcgsc.ca ============================================================================ make[3]: *** [Makefile:667: test-suite.log] Error 1 make[3]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' make[2]: *** [Makefile:775: check-TESTS] Error 2 make[2]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' make[1]: *** [Makefile:855: check-am] Error 2 make[1]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc' make: *** [Makefile:469: check-recursive] Error 1
(gdb) where #0 0x00007fae17fd4291 in raise () from /lib64/libc.so.6 #1 0x00007fae17fbe536 in abort () from /lib64/libc.so.6 #2 0x00007fae17fbe41f in __assert_fail_base.cold () from /lib64/libc.so.6 #3 0x00007fae17fcccf2 in __assert_fail () from /lib64/libc.so.6 #4 0x000055aaa4cbe543 in main () at BloomFilterTests.cpp:133 (gdb) bt full #0 0x00007fae17fd4291 in raise () from /lib64/libc.so.6 No symbol table info available. #1 0x00007fae17fbe536 in abort () from /lib64/libc.so.6 No symbol table info available. #2 0x00007fae17fbe41f in __assert_fail_base.cold () from /lib64/libc.so.6 No symbol table info available. #3 0x00007fae17fcccf2 in __assert_fail () from /lib64/libc.so.6 No symbol table info available. #4 0x000055aaa4cbe543 in main () at BloomFilterTests.cpp:133 memUsage = 6236 filterSize = 1000000 numHashes = 3 k = 4 seq = 0x55aaa4ce7b71 "ACGTAC" filter = {m_filter = 0x55aaa689f120 "", m_size = 1000000, m_sizeInBytes = 125000, m_hashNum = 3, m_kmerSize = 4, m_dFPR = 0, m_nEntry = 0, m_tEntry = 0} insertIt = {m_seq = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, _M_p = 0x7ffd999efc50 "ACGTAC"}, _M_string_length = 6, {_M_local_buf = "ACGTAC\000\000\000\000\000\000\000\000\000", _M_allocated_capacity = 73947865891649}}, m_h = 3, m_k = 4, m_hVec = 0x55aaa689d090, m_pos = 18446744073709551615, m_fhVal = 17023861349393640413, m_rhVal = 17023861349393640413} queryIt = {m_seq = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, _M_p = 0x7ffd999efca0 "ACGTAC"}, _M_string_length = 6, {_M_local_buf = "ACGTAC\000\000\000\000\000\000\000\000\000", _M_allocated_capacity = 73947865891649}}, m_h = 3, m_k = 4, m_hVec = 0x55aaa689d0b0, m_pos = 18446744073709551615, m_fhVal = 17023861349393640413, m_rhVal = 17023861349393640413} __PRETTY_FUNCTION__ = "int main()" filename = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, _M_p = 0x55aaa689e0e0 "/tmp/bloomFilter.bf"}, _M_string_length = 19, {_M_local_buf = "\023", '\000' <repeats 14 times>, _M_allocated_capacity = 19}} ifile = {<std::basic_istream<char, std::char_traits<char> >> = {<std::basic_ios<char, std::char_traits<char> >> = {<std::ios_base> = { _vptr.ios_base = 0x7fae183a6e88 <vtable for std::basic_ifstream<char, std::char_traits<char> >+64>, static boolalpha = std::_S_boolalpha, static dec = std::_S_dec, static fixed = std::_S_fixed, static hex = std::_S_hex, static internal = std::_S_internal, static left = std::_S_left, static oct = std::_S_oct, static right = std::_S_right, static scientific = std::_S_scientific, static showbase = std::_S_showbase, static showpoint = std::_S_showpoint, static showpos = std::_S_showpos, static skipws = std::_S_skipws, static unitbuf = std::_S_unitbuf, static uppercase = std::_S_uppercase, static adjustfield = std::_S_adjustfield, static basefield = std::_S_basefield, static floatfield = std::_S_floatfield, static badbit = std::_S_badbit, static eofbit = std::_S_eofbit, static failbit = std::_S_failbit, static goodbit = std::_S_goodbit, static app = std::_S_app, static ate = std::_S_ate, static binary = std::_S_bin, static in = std::_S_in, static out = std::_S_out, static trunc = std::_S_trunc, static beg = std::_S_beg, static cur = std::_S_cur, static end = std::_S_end, _M_precision = 6, _M_width = 0, _M_flags = 4098, _M_exception = std::_S_goodbit, _M_streambuf_state = std::_S_goodbit, _M_callbacks = 0x0, _M_word_zero = {_M_pword = 0x0, _M_iword = 0}, _M_local_word = {{_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, { _M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}}, _M_word_size = 8, _M_word = 0x7ffd999efec0, _M_ios_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x7fae183afd20 <(anonymous namespace)::c_locale_impl>}}, _M_tie = 0x0, _M_fill = 0 '\000', _M_fill_init = false, _M_streambuf = 0x7ffd999efd90, _M_ctype = 0x7fae183af740 <(anonymous namespace)::ctype_c>, _M_num_put = 0x7fae183af6d0 <(anonymous namespace)::num_put_c>, _M_num_get = 0x7fae183af6e0 <(anonymous namespace)::num_get_c>}, _vptr.basic_istream = 0x7fae183a6e60 <vtable for std::basic_ifstream<char, std::char_traits<char> >+24>, _M_gcount = 0}, _M_filebuf = {<std::basic_streambuf<char, std::char_traits<char> >> = {_vptr.basic_streambuf = 0x7fae183a6d68 <vtable for std::basic_filebuf<char, std::char_traits<char> >+16>, _M_in_beg = 0x0, _M_in_cur = 0x0, _M_in_end = 0x0, _M_out_beg = 0x0, _M_out_cur = 0x0, _M_out_end = 0x0, _M_buf_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x7fae183afd20 <(anonymous namespace)::c_locale_impl>}}, _M_lock = {__data = {__lock = 0, __count = 0, __owner = 0, __nusers = 0, __kind = 0, __spins = 0, __elision = 0, __list = {__prev = 0x0, __next = 0x0}}, __size = '\000' <repeats 39 times>, __align = 0}, _M_file = {_M_cfile = 0x0, _M_cfile_created = true}, _M_mode = 0, _M_state_beg = {__count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}, _M_state_cur = {__count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}, _M_state_last = { __count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}, _M_buf = 0x0, _M_buf_size = 8192, _M_buf_allocated = false, _M_reading = false, _M_writing = false, _M_pback = 0 '\000', _M_pback_cur_save = 0x0, _M_pback_end_save = 0x0, _M_pback_init = false, _M_codecvt = 0x7fae183af6b0 <(anonymous namespace)::codecvt_c>, _M_ext_buf = 0x0, _M_ext_buf_size = 0, _M_ext_next = 0x0, _M_ext_end = 0x0}} headerEnd = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, _M_p = 0x7ffd999efc10 "[HeaderEnd]"}, _M_string_length = 11, {_M_local_buf = "[HeaderEnd]\000\000\000\000", _M_allocated_capacity = 5004173617767204955}} line = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, _M_p = 0x55aaa689e2d0 "[HeaderEnd]"}, _M_string_length = 11, {_M_local_buf = "<\000\000\000\000\000\000\000IcE\000\000\000\000", _M_allocated_capacity = 60}} headerEndCheck = true currPos = 169 fileSize = 125169 filter2 = {m_filter = 0x55aaa68bf9d0 "", m_size = 1000000, m_sizeInBytes = 125000, m_hashNum = 3, m_kmerSize = 4, m_dFPR = 0, m_nEntry = 0, m_tEntry = 0} queryIt2 = {m_seq = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, _M_p = 0x7ffd999efcf0 "ACGTAC"}, _M_string_length = 6, {_M_local_buf = "ACGTAC\000\000\000\000\000\000\000\000\000", _M_allocated_capacity = 73947865891649}}, m_h = 3, m_k = 4, m_hVec = 0x55aaa689e460, m_pos = 18446744073709551615, m_fhVal = 17023861349393640413, m_rhVal = 17023861349393640413} filter3 = 0x55aaa689e1e0 tempMem = 332 (gdb)
mmokrejs
commented
3 years ago mmokrejs
commented
3 years ago