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bcgsc
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ntCard
Estimating k-mer coverage histogram of genomics data
http://www.bcgsc.ca/platform/bioinfo/software/ntcard
MIT License
76
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Makefile.am: fix missing files on "clean" target.
#78
emollier
opened
11 months ago
0
Can't build from source
#77
7PintsOfCherryGarcia
opened
1 year ago
3
dyld: cannot load Abort trap: 6
#76
GarrettGee63
opened
1 year ago
0
Do you plan to upgrade to latest nthash
#75
tillea
opened
1 year ago
0
Use of read names to determine input file type
#74
aleferna
opened
2 years ago
0
integer underflow bug?
#73
kmnip
opened
2 years ago
6
Problems w.r.t speed of ntCard and accuracy in genome size estimation
#54
Souvadra
closed
2 years ago
8
MACOS problem
#53
Niohuruzh
closed
2 years ago
2
compatibility with 32 bit platforms
#52
emollier
closed
2 years ago
3
add description of output to README
#51
taylorreiter
closed
3 years ago
1
ntcard with lrz compressed files
#50
KristinaGagalova
closed
3 years ago
1
ntcard.cpp: update low kmer sample check to evaluate entire expression
#49
jwcodee
closed
3 years ago
0
Integer overflow on calculating kmer distribution
#48
sapoudel
closed
3 years ago
5
Setting the verbosity arguments
#47
sapoudel
opened
3 years ago
3
Jagged kmer coverage profiles with gzipped FASTA
#46
warrenlr
opened
3 years ago
3
release 1.2.2
#45
jwcodee
closed
4 years ago
0
azure: force symlink
#44
jwcodee
closed
4 years ago
0
ntcard.cpp: remove unnecessary type cast
#43
jwcodee
closed
4 years ago
0
azure: add more tests
#42
jwcodee
closed
4 years ago
0
Compilation blocked because of Werror
#41
Malfoy
closed
4 years ago
1
release 1.2.1
#40
jwcodee
closed
4 years ago
0
CI: add fa file tests
#39
jwcodee
closed
4 years ago
0
v1.2.0 does not work with FASTA files
#38
kmnip
closed
4 years ago
4
release 1.2.0
#37
jwcodee
closed
4 years ago
0
use ntHash 2.1.0
#36
jwcodee
closed
4 years ago
1
ntcard: fix edge case of no kmer sampled
#35
jwcodee
closed
4 years ago
0
clang-formatted ntcard.cpp
#34
jwcodee
closed
4 years ago
0
add rna integration test
#33
jwcodee
closed
4 years ago
0
Integration test
#32
jwcodee
closed
4 years ago
0
Set up CI with Azure Pipelines
#31
lcoombe
closed
4 years ago
0
Count Gap Seed
#30
jwcodee
closed
4 years ago
0
ntCard report interpretation
#29
hidvegin
closed
4 years ago
3
ntcard run error: Abort trap 6
#28
emmannaemeka
closed
4 years ago
3
Support for U bases not working properly
#27
kmnip
closed
4 years ago
2
Reg: kmer dump generation
#26
harish0201
closed
5 years ago
1
Support Uracil nucleotides in input files
#25
kmnip
closed
5 years ago
5
K-mers with odd frequency having 0 counts
#24
TEcandidates
closed
5 years ago
9
ntcard file.gbk fails, but file.gff works?
#23
tseemann
closed
6 years ago
6
Report bugs to email or github ?
#22
tseemann
closed
6 years ago
1
Add @in.list syntax to --help
#21
tseemann
closed
6 years ago
1
Add -h alias for --help ?
#20
tseemann
closed
6 years ago
5
Speed doesn't change when --threads increases?
#19
tseemann
closed
6 years ago
12
--version is a bit non-standard
#18
tseemann
closed
6 years ago
0
Stop automatic outputting to "freq_kNN.hist"
#17
tseemann
closed
6 years ago
2
Show help when no parameters?
#16
tseemann
closed
6 years ago
4
Errant backtick
#15
tseemann
closed
6 years ago
0
Typo in --help
#14
tseemann
closed
6 years ago
1
Tag a new stable release
#13
sjackman
closed
6 years ago
4
headerless fasta sequences seem to be ignored
#12
rsharris
closed
6 years ago
4
brew install brewsci/bio/ntcard
#11
sjackman
closed
6 years ago
0
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