Closed Shokusei closed 2 years ago
Hi @Shokusei,
That looks like an issue with your pybedtools
installation, which is a dependency of ntJoin. You can see that because the traceback is related to import pybedtools
. It looks like you are using a conda environment, so my best first advice would be to create a fresh conda environment, and install the ntJoin dependencies there (or conda install -c bioconda -c conda-forge ntjoin=1.0.8
. You can then see whether pybedtools is working as expected by opening an interactive python session, and trying import pybedtools
.
Do follow-up with more information if you have found an issue with ntJoin itself, versus the installation of a dependency.
Thank you for your interest in ntJoin! Lauren
This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your interest in ntJoin!
Hi, @lcoombe I want to use this software to scaffold the contigs obtained from the other genome assembler. However, after typing the command "test_installation.sh" in the test directory, I found the following error message.
(RSEM) [iceplant4561@at138 tests]$ ./test_installation.sh
I have asked my friend about this issue once. He said that I may use the other python object "/anaconda3/pkgs/sqlite-3.32.3-hcee41ef_1/lib/libsqlite3.so".
Considering the above facts, I would like you to solve this problem!