bcgsc / ntSynt

Detecting multi-genome synteny using minimizer graph mapping
GNU General Public License v3.0
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Add OPENMP parallelization to BF population #4

Closed lcoombe closed 1 year ago

lcoombe commented 1 year ago
C. elegans tests: Code version Time (sec)
Before 107.95
After (8 threads) 36.31

BFs generated are identical:

(synteny) [lcoombe@hpce704 test4]$ cmp ntSynt.k24.w1000.solid.bf ../ntSynt.k24.w1000.solid.bf
(synteny) [lcoombe@hpce704 test4]$