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ntSynt
Detecting multi-genome synteny using minimizer graph mapping
GNU General Public License v3.0
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Fix bug when extending minimizer graph using w < k
#8
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lcoombe
closed
1 year ago
lcoombe
commented
1 year ago
We mask the assembly prior to lower w extension using the synteny blocks
Need to filter out small blocks to ensure that the bedtools slop has the expected behaviour
For low 'w' extensions, it was possible for the 'slop' to attempt to extend longer than 2*w, since k > w in these cases
This tweak should fix that edge case
Also updating CI for btllib 1.6.2, fixing macOS (requires clang-15+, and
compilers
only has clang-14 right now)
compilers
only has clang-14 right now)