Build fix: changing reinstall method in Dockerfile

bcgsc / orca

:whale: Genomics Research Container Architecture

http://www.bcgsc.ca/services/orca

GNU General Public License v3.0

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Build fix: changing reinstall method in Dockerfile #102

Closed dmohadjel closed 5 years ago

dmohadjel commented 5 years ago

Addressing this error in the build from DockerHub:

Step 5/6 : RUN brew reinstall --build-from-source gmap-gsnap meme nextgenmap repeatmasker
---> Running in 3c02a204c299
Error: Invalid cross-device link @ rb_file_s_rename - (/home/linuxbrew/.linuxbrew/Cellar/gmap-gsnap/2019-06-10, /home/linuxbrew/.linuxbrew/Cellar/gmap-gsnap/2019-06-10.reinstall)

lcoombe commented 5 years ago

@dmohadjel - Could you rebase on the current ORCA master branch? It looks like maybe you made these changes on an older commit?

dmohadjel commented 5 years ago

Yeah that's my bad, sorry. I didn't realize it was out of date.

lcoombe commented 5 years ago

No worries!

lcoombe commented 5 years ago

Merged - thanks Dara!