Open tmozgach opened 7 years ago
matplotlib
is probably responsible for errors (poretools).
sga works in empty image =>something influences on it
What's the error message? Please report brew gist-logs sga
mummer works in empty image =>something influences on it
That's the version of perl
I believe. It doesn't like newer versions of Perl.
poretools works in empty image =>something influences on it
The error message is from h5py
. See if you can get a more helpful and verbose error message from brew gist-logs poretools
in the formulae discovar
there is
fails_with :gcc => "5" do
cause "error: reference to 'align' is ambiguous. See https://groups.google.com/a/broadinstitute.org/forum/?hl=en&fromgroups=#!topic/discovar-user-forum/zuqNcaRUetA"
end
So, fixing will be tricky?
discovar
shouldn't need a fix. Is brew test discovar
failing? What's the error message?
Oh, you mean brew install discovar
is failing. In that case, add
depends_on "gcc@4.9" => :build
No need to bump the revision for discovar
. brew install discovar
should use the bottle and should succeed. What command is failing, and what is the error message?
discovar
fails a test. If I compile that with 4.9, it works, but in my image there is no 4.9 and you said that it should work with 5 otherwise it is a bug.
brew install discovar
should use the precompiled bottle and succeed. brew test discovar
should succeed with gcc-5
(I think). Which command is failing, and what is the error message?
Testing homebrew/science/discovar
Error: homebrew/science/discovar: failed
homebrew/science/discovar cannot be built with any available compilers.
Install Clang or brew install gcc
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/compilers.rb:127:in `compiler'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/compilers.rb:109:in `select_for'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/extend/ENV/shared.rb:176:in `compiler'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/extend/ENV/std.rb:78:in `setup_build_environment'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/test.rb:22:in `<main>'
linuxbrew@13b6730f2934:~$ which gcc
/home/linuxbrew/.linuxbrew/bin/gcc
linuxbrew@13b6730f2934:~$ gcc --version
gcc (Homebrew gcc 5.4.0) 5.4.0
Okay. Good to know. That's kind of a bug in brew test
, sort of. It'd be tricky to fix though. If you add gcc@4.9
to the ORCA image it should work.
Just instaliing gcc@4.9
works!
2017.10.12 Install:
What's the error message?
@sjackman It is an automated build, I haven't checked that using a terminal yet.
[91mcurl: (23) Failed writing body (9776 != 16160)
[0m
[91mError: Failed to download resource "kent-tools"
Download failed: https://linuxbrew.bintray.com/bottles-science/kent-tools-353.x86_64_linux.bottle.tar.gz
[0m
[91mWarning: Bottle installation failed: building from source.[0m
[91m
[0m
[91mError: No space left on device @ dir_s_mkdir - /tmp/homebrew20171013-5-19ydkj3
[0m
Removing intermediate container 011074aec7b9
No space left on device
The disk is full.
Install:
Test: