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bcgsc / orca

:whale: Genomics Research Container Architecture
http://www.bcgsc.ca/services/orca
GNU General Public License v3.0
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Remove mysql - due to build error #75

Closed lcoombe closed 5 years ago

lcoombe commented 5 years ago

brew install mysql failing with error:

CMake Error at cmake/do_abi_check.cmake:86 (MESSAGE):
  ABI check found difference between
  /tmp/mysql-20190404-31760-1h9gyd3/mysql-8.0.15/include/mysql/services.h.pp
  and /tmp/mysql-20190404-31760-1h9gyd3/mysql-8.0.15/abi_check.out

make[2]: *** [CMakeFiles/abi_check] Error 1
make[2]: Leaving directory `/tmp/mysql-20190404-31760-1h9gyd3/mysql-8.0.15'
make[1]: *** [CMakeFiles/abi_check.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....

The blat formula was changed upstream to make mysql a build dependency, so none of the tools should require mysql as a run-time dependency.