Closed stLFR closed 2 years ago
physlr-make scaffolds lr=../ssb_interleaved \
draft=LinkedReads.contig_0 \
ref=hg38_no_alt_analysis_set \
protocol=stlfr
Try this
@stLFR - I'd also suggest soft-linking the reads file to your current working directory. I've found that using paths in the makefile variables can sometimes cause errors.
Closing due to inactivity
Hello All,
I'm attempting to scaffold some contigs using physlr. Here is the full error:
And here's the command being run:
I'm not too adept with makefiles, so any help would be appreciated. Sorry for the trouble