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bcgsc / physlr

:chains: Construct a Physical Map from Linked Reads
GNU General Public License v3.0
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port physlr split-minimizers to c++ #145

Closed jwcodee closed 4 years ago

jwcodee commented 4 years ago

We find that using split minimizers gave better scaffold to molecule mapping than without. In particular, this should resolve one of them problems we saw which was the same scaffold mapping to multiple location.

jwcodee commented 4 years ago
Time (hh:mm:ss) Ram (GB)
Python 16 threads 7:25:01 345
C++ 16 threads 1:57:02 30
C++ 48 threads 0:41:02 30

Based on usr/bin/time

lcoombe commented 4 years ago

Time (hh:mm:ss) Ram (GB) Python 16 threads 7:25:01 345 C++ 48 threads 0:41:02 30 Based on usr/bin/time

That's a great improvement! :+1: