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bcgsc / pori_python

GNU General Public License v3.0
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Feat/external deployment #20

Closed elewis2 closed 4 months ago

elewis2 commented 4 months ago

updates tests - skip tests requiring bcgsc data expand test_upload tests add delete to ipr_conn fix bug where graphkb/genes might try to find rid from rid instead of name, in get_preferred_gene_name

codecov-commenter commented 4 months ago

Codecov Report

Attention: Patch coverage is 83.33333% with 6 lines in your changes missing coverage. Please review.

Project coverage is 86.23%. Comparing base (28682d0) to head (5855c67).

Files Patch % Lines
pori_python/ipr/connection.py 54.54% 5 Missing :warning:
pori_python/graphkb/genes.py 92.85% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #20 +/- ## =========================================== + Coverage 85.52% 86.23% +0.70% =========================================== Files 18 18 Lines 2135 2157 +22 =========================================== + Hits 1826 1860 +34 + Misses 309 297 -12 ``` | [Flag](https://app.codecov.io/gh/bcgsc/pori_python/pull/20/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/bcgsc/pori_python/pull/20/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc) | `86.23% <83.33%> (+0.70%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=bcgsc#carryforward-flags-in-the-pull-request-comment) to find out more.

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