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bcgsc / tigmint

⛓ Correct misassemblies using linked AND long reads
https://bcgsc.github.io/tigmint/
GNU General Public License v3.0
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tigmint-make errors #12

Closed macarima closed 6 years ago

macarima commented 6 years ago

Hello.

When I execute 'tigmint-make', I got some errors like below.

macarima@localhost:~$ tigmint-make
make: command: Command not found
make: command: Command not found
make: command: Command not found
Tigmint: Correct misassemblies using linked reads
Usage: tigmint-make [COMMAND]... [PARAMETER=VALUE]...
Example: tigmint-make tigmint draft=myassembly reads=myreads
For more information see https://bcgsc.github.io/tigmint/

How can I remove these errors?

fbemm commented 6 years ago

The make files is using shell commands in some parts. If you work on Ubuntu there is no shell by default. The errors don't break tigmint. In case you still want to get rid of them replace all appearances of shell command -v with which.

lcoombe commented 6 years ago

Thanks @fbemm!

macarima commented 6 years ago

Yes, I'm using Ubuntu 16.04. If the errors don't break tigmint, I won't worry about running tigmint. Thank you :^) @fbemm