lcoombe
commented
11 months ago Hi @ferreirafm,
Apologies for the delayed response - I was on vacation.
I'd recommend installing tigmint using conda if possible - it just makes installation smoother, so you don't have to worry about dependencies.
If you need to compile tigmint from source, take a look at this section of the btllib README - https://github.com/bcgsc/btllib#using-the-library. Have you also run the CPPFLAGS export command?
Thank you for your interest in Tigmint! Lauren
ferreirafm
Hi devs, How do I have to set the btllib so as can compile tigmint? The btllib was successfully compiled: ######### mephisto:/usr/local/programs/btllib/install> tree -L 2 . ├── bin │ └── indexlr ├── include │ └── btllib └── lib ├── btllib ├── _btllib.so -> /usr/local/programs/btllib/install/lib/btllib/python/btllib/_btllib.so ├── init.py -> /usr/local/programs/btllib/install/lib/btllib/python/btllib/init.py └── libbtllib.a ###########
Before compile tigmint I set: export LDFLAGS="-L /usr/local/programs/btllib/include/btllib -lbtllib $LDFLAGS"
And tigmint compilation issue: mephisto:/usr/local/programs/tigmint> make -C src make: Entering directory '/usr/local/programs/tigmint/src' g++ -o long-to-linked-pe long-to-linked-pe.cpp -O3 -Wall -Werror -Wno-unknown-pragmas -std=c++11 -pthread -L /usr/local/programs/btllib/install/lib -lbtllib -l btllib long-to-linked-pe.cpp:1:10: fatal error: btllib/seq_reader.hpp: No such file or directory 1 | #include "btllib/seq_reader.hpp" | ^
~~~~~~ compilation terminated.Any clues are apreciated.