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bcgsc
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tigmint
⛓ Correct misassemblies using linked AND long reads
https://bcgsc.github.io/tigmint/
GNU General Public License v3.0
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Paf tigmint molecule
#45
Closed
lcoombe
closed
3 years ago
lcoombe
commented
3 years ago
Improves the performance of molecule extent inference for
tigmint-long
Instead of aligning pseudo-linked reads, and sorting the SAM file by barcode, map the pseudo-linked reads and output a PAF
Sorting by barcode is not neccessary for
tigmint-long
Mapping with
minimap2
is much faster than using alignments
Add new
tigmint-molecule-paf
script for inferring molecule extents for
tigmint-long
using a PAF input
Has similar logic to
tigmint-molecule
Update tests
tigmint-long
tigmint-long
minimap2
is much faster than using alignmentstigmint-molecule-paf
script for inferring molecule extents fortigmint-long
using a PAF inputtigmint-molecule