search

bcgsc / tigmint

⛓ Correct misassemblies using linked AND long reads
https://bcgsc.github.io/tigmint/
GNU General Public License v3.0
54 stars 13 forks source link

Respect $TMPDIR as anticipated by sort tool #60

Closed mmokrejs closed 2 years ago

mmokrejs commented 2 years ago

The sort tool by default uses /tmp which is typically very small and even may not be writable in cluster environments by users. If non-empty, the Makefile shall pass its contents down to sort commandline.

lcoombe commented 2 years ago

Resolved through discussion in #64. Just to recap in case any other users are interested - Tigmint will respect the TMPDIR variable that you have set in your environment for the sorting steps.