Conda problems, instalation

[weedcentipede]

Hi, I'm trying to install Trans-Abyss through Conda, but apparently it's not longer available, There's another way to install it?

(Miscpy27) [larteag7@cronos Purpureocillium]$ conda install -c bioconda transabyss
Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

  - transabyss
  - python-igraph

Current channels:

  - https://conda.anaconda.org/bioconda/linux-64
  - https://conda.anaconda.org/bioconda/noarch
  - https://repo.anaconda.com/pkgs/main/linux-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/free/linux-64
  - https://repo.anaconda.com/pkgs/free/noarch
  - https://repo.anaconda.com/pkgs/r/linux-64
  - https://repo.anaconda.com/pkgs/r/noarch
  - https://repo.anaconda.com/pkgs/pro/linux-64
  - https://repo.anaconda.com/pkgs/pro/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

Thanks in advance, Luis Alfonso.

[sjackman]

I've created PR https://github.com/brewsci/homebrew-bio/pull/470 to add Trans-ABySS to Brewsci/bio for Homebrew and Linuxbrew.

brew install brewsci/bio/transabyss

@kmnip Would you like to add a setup.py file and add Trans-ABySS to PyPI? I did this for Tigmint, and it's pretty straight forward. See… https://github.com/bcgsc/tigmint/blob/master/setup.py Once you've done that, it's even easier to Trans-ABySS to Bioconda. See… https://github.com/bioconda/bioconda-recipes/blob/master/recipes/tigmint/meta.yaml

[sjackman]

I've merged PR https://github.com/brewsci/homebrew-bio/pull/470 to add Trans-ABySS to Brewsci/bio.

brew install brewsci/bio/transabyss

[weedcentipede]

Hi Shaun, It worked! Thanks! Luis

[sjackman]

Glad to hear it, Luis!