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bcube-project / Bcube.jl

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New gallery and project version #110

Closed bmxam closed 3 months ago

bmxam commented 3 months ago

I propose this new gallery. Check out https://github.com/bcube-project/Bcube.jl/tree/new_gallery (page bottom) and https://bcube-project.github.io/Bcube.jl/previews/PR110 (page bottom)

Once merged, I will tag a new version to obtain our first DOI from Zenodo.

github-actions[bot] commented 3 months ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/Bcube.jl/Bcube.jl* ## Job Properties * Time of benchmarks: - Target: 18 Jun 2024 - 13:35 - Baseline: 18 Jun 2024 - 13:38 * Package commits: - Target: b3a3f0 - Baseline: 25de50 * Julia commits: - Target: 48d4fd - Baseline: 48d4fd * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |------------------------------------------------------|------------------------------|--------------| | `["assemble", "basic bilinear", "stiffness matrix"]` | 1.17 (5%) :x: | 1.00 (1%) | | `["assemble", "poisson DG", "a_Γb(u, v)"]` | 0.71 (5%) :white_check_mark: | 1.00 (1%) | | `["covo", "TriQuad", "explicit_step"]` | 1.07 (5%) :x: | 1.00 (1%) | | `["covo", "TriQuad", "integral_volume"]` | 1.06 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["assemble", "basic bilinear"]` - `["assemble", "poisson DG"]` - `["covo", "Quad"]` - `["covo", "TriQuad"]` - `["entities"]` - `["mesh"]` ## Julia versioninfo ### Target ``` Julia Version 1.10.4 Commit 48d4fd48430 (2024-06-04 10:41 UTC) Build Info: Official https://julialang.org/ release Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.4 LTS uname: Linux 6.5.0-1021-azure #22~22.04.1-Ubuntu SMP Tue Apr 30 16:08:18 UTC 2024 x86_64 x86_64 CPU: AMD EPYC 7763 64-Core Processor: speed user nice sys idle irq #1 3240 MHz 1708 s 0 s 224 s 4823 s 0 s #2 3244 MHz 2798 s 0 s 239 s 3725 s 0 s #3 3205 MHz 1563 s 0 s 225 s 4954 s 0 s #4 2445 MHz 1706 s 0 s 247 s 4803 s 0 s Memory: 15.606502532958984 GB (12247.85546875 MB free) Uptime: 678.73 sec Load Avg: 1.02 1.25 0.82 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-15.0.7 (ORCJIT, znver3) Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores) ``` ### Baseline ``` Julia Version 1.10.4 Commit 48d4fd48430 (2024-06-04 10:41 UTC) Build Info: Official https://julialang.org/ release Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.4 LTS uname: Linux 6.5.0-1021-azure #22~22.04.1-Ubuntu SMP Tue Apr 30 16:08:18 UTC 2024 x86_64 x86_64 CPU: AMD EPYC 7763 64-Core Processor: speed user nice sys idle irq #1 2445 MHz 2513 s 0 s 291 s 5855 s 0 s #2 2641 MHz 3307 s 0 s 285 s 5073 s 0 s #3 3243 MHz 1872 s 0 s 260 s 6512 s 0 s #4 2445 MHz 1893 s 0 s 283 s 6482 s 0 s Memory: 15.606502532958984 GB (12157.38671875 MB free) Uptime: 869.3 sec Load Avg: 1.0 1.13 0.86 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-15.0.7 (ORCJIT, znver3) Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores) ``` --- # Target result # Benchmark Report for */home/runner/work/Bcube.jl/Bcube.jl* ## Job Properties * Time of benchmark: 18 Jun 2024 - 13:35 * Package commit: b3a3f0 * Julia commit: 48d4fd * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["assemble", "basic bilinear", "mass matrix"]` | 16.038 ms (5%) | | 13.20 MiB (1%) | 51 | | `["assemble", "basic bilinear", "stiffness matrix"]` | 94.192 ms (5%) | | 13.20 MiB (1%) | 51 | | `["assemble", "poisson DG", "AffineFESystem"]` | 53.815 ms (5%) | | 71.64 MiB (1%) | 17155 | | `["assemble", "poisson DG", "a_Γ(u, v)"]` | 37.783 ms (5%) | | 59.32 MiB (1%) | 13065 | | `["assemble", "poisson DG", "a_Γb(u, v)"]` | 7.264 ms (5%) | | 10.79 MiB (1%) | 3163 | | `["assemble", "poisson DG", "a_Ω(u, v)"]` | 7.707 ms (5%) | | 308.81 KiB (1%) | 29 | | `["assemble", "poisson DG", "l_Γb(v)"]` | 58.670 μs (5%) | | 139.38 KiB (1%) | 929 | | `["assemble", "poisson DG", "l_Ω(v)"]` | 12.343 μs (5%) | | 2.12 KiB (1%) | 1 | | `["covo", "Quad", "explicit_step"]` | 79.420 ms (5%) | | 34.25 MiB (1%) | 4414 | | `["covo", "Quad", "integral_surface"]` | 51.007 ms (5%) | | | | | `["covo", "Quad", "integral_volume"]` | 20.489 ms (5%) | | | | | `["covo", "TriQuad", "explicit_step"]` | 394.156 ms (5%) | 26.843 ms | 348.42 MiB (1%) | 1812340 | | `["covo", "TriQuad", "integral_surface"]` | 294.578 ms (5%) | | 234.44 MiB (1%) | 1424064 | | `["covo", "TriQuad", "integral_volume"]` | 62.377 ms (5%) | | 51.71 MiB (1%) | 379526 | | `["entities", "edges2nodes"]` | 1.552 ns (5%) | | | | | `["entities", "nedges"]` | 1.552 ns (5%) | | | | | `["entities", "nnodes"]` | 3.095 ns (5%) | | | | | `["entities", "nodes"]` | 1.552 ns (5%) | | | | | `["mesh", "todo"]` | 1.552 ns (5%) | | | | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["assemble", "basic bilinear"]` - `["assemble", "poisson DG"]` - `["covo", "Quad"]` - `["covo", "TriQuad"]` - `["entities"]` - `["mesh"]` ## Julia versioninfo ``` Julia Version 1.10.4 Commit 48d4fd48430 (2024-06-04 10:41 UTC) Build Info: Official https://julialang.org/ release Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.4 LTS uname: Linux 6.5.0-1021-azure #22~22.04.1-Ubuntu SMP Tue Apr 30 16:08:18 UTC 2024 x86_64 x86_64 CPU: AMD EPYC 7763 64-Core Processor: speed user nice sys idle irq #1 3240 MHz 1708 s 0 s 224 s 4823 s 0 s #2 3244 MHz 2798 s 0 s 239 s 3725 s 0 s #3 3205 MHz 1563 s 0 s 225 s 4954 s 0 s #4 2445 MHz 1706 s 0 s 247 s 4803 s 0 s Memory: 15.606502532958984 GB (12247.85546875 MB free) Uptime: 678.73 sec Load Avg: 1.02 1.25 0.82 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-15.0.7 (ORCJIT, znver3) Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores) ``` --- # Baseline result # Benchmark Report for */home/runner/work/Bcube.jl/Bcube.jl* ## Job Properties * Time of benchmark: 18 Jun 2024 - 13:38 * Package commit: 25de50 * Julia commit: 48d4fd * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["assemble", "basic bilinear", "mass matrix"]` | 15.639 ms (5%) | | 13.20 MiB (1%) | 51 | | `["assemble", "basic bilinear", "stiffness matrix"]` | 80.755 ms (5%) | | 13.20 MiB (1%) | 51 | | `["assemble", "poisson DG", "AffineFESystem"]` | 53.568 ms (5%) | | 71.64 MiB (1%) | 17155 | | `["assemble", "poisson DG", "a_Γ(u, v)"]` | 38.781 ms (5%) | | 59.32 MiB (1%) | 13065 | | `["assemble", "poisson DG", "a_Γb(u, v)"]` | 10.176 ms (5%) | | 10.79 MiB (1%) | 3163 | | `["assemble", "poisson DG", "a_Ω(u, v)"]` | 7.793 ms (5%) | | 308.81 KiB (1%) | 29 | | `["assemble", "poisson DG", "l_Γb(v)"]` | 58.750 μs (5%) | | 139.38 KiB (1%) | 929 | | `["assemble", "poisson DG", "l_Ω(v)"]` | 12.343 μs (5%) | | 2.12 KiB (1%) | 1 | | `["covo", "Quad", "explicit_step"]` | 80.302 ms (5%) | | 34.25 MiB (1%) | 4414 | | `["covo", "Quad", "integral_surface"]` | 51.777 ms (5%) | | | | | `["covo", "Quad", "integral_volume"]` | 20.529 ms (5%) | | | | | `["covo", "TriQuad", "explicit_step"]` | 368.436 ms (5%) | 26.397 ms | 348.42 MiB (1%) | 1812340 | | `["covo", "TriQuad", "integral_surface"]` | 282.587 ms (5%) | | 234.44 MiB (1%) | 1424064 | | `["covo", "TriQuad", "integral_volume"]` | 58.995 ms (5%) | | 51.71 MiB (1%) | 379526 | | `["entities", "edges2nodes"]` | 1.552 ns (5%) | | | | | `["entities", "nedges"]` | 1.552 ns (5%) | | | | | `["entities", "nnodes"]` | 3.095 ns (5%) | | | | | `["entities", "nodes"]` | 1.552 ns (5%) | | | | | `["mesh", "todo"]` | 1.552 ns (5%) | | | | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["assemble", "basic bilinear"]` - `["assemble", "poisson DG"]` - `["covo", "Quad"]` - `["covo", "TriQuad"]` - `["entities"]` - `["mesh"]` ## Julia versioninfo ``` Julia Version 1.10.4 Commit 48d4fd48430 (2024-06-04 10:41 UTC) Build Info: Official https://julialang.org/ release Platform Info: OS: Linux (x86_64-linux-gnu) Ubuntu 22.04.4 LTS uname: Linux 6.5.0-1021-azure #22~22.04.1-Ubuntu SMP Tue Apr 30 16:08:18 UTC 2024 x86_64 x86_64 CPU: AMD EPYC 7763 64-Core Processor: speed user nice sys idle irq #1 2445 MHz 2513 s 0 s 291 s 5855 s 0 s #2 2641 MHz 3307 s 0 s 285 s 5073 s 0 s #3 3243 MHz 1872 s 0 s 260 s 6512 s 0 s #4 2445 MHz 1893 s 0 s 283 s 6482 s 0 s Memory: 15.606502532958984 GB (12157.38671875 MB free) Uptime: 869.3 sec Load Avg: 1.0 1.13 0.86 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-15.0.7 (ORCJIT, znver3) Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `lbt` | | `Sys.CPU_THREADS` | 4 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Address sizes: 48 bits physical, 48 bits virtual Byte Order: Little Endian CPU(s): 4 On-line CPU(s) list: 0-3 Vendor ID: AuthenticAMD Model name: AMD EPYC 7763 64-Core Processor CPU family: 25 Model: 1 Thread(s) per core: 2 Core(s) per socket: 2 Socket(s): 1 Stepping: 1 BogoMIPS: 4890.84 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm Virtualization: AMD-V Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB (2 instances) L1i cache: 64 KiB (2 instances) L2 cache: 1 MiB (2 instances) L3 cache: 32 MiB (1 instance) NUMA node(s): 1 NUMA node0 CPU(s): 0-3 Vulnerability Gather data sampling: Not affected Vulnerability Itlb multihit: Not affected Vulnerability L1tf: Not affected Vulnerability Mds: Not affected Vulnerability Meltdown: Not affected Vulnerability Mmio stale data: Not affected Vulnerability Retbleed: Not affected Vulnerability Spec rstack overflow: Vulnerable: Safe RET, no microcode Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Retpolines; STIBP disabled; RSB filling; PBRSB-eIBRS Not affected; BHI Not affected Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Not affected | Cpu Property | Value | |:------------------ |:---------------------------------------------------------- | | Brand | AMD EPYC 7763 64-Core Processor | | Vendor | :AMD | | Architecture | :Unknown | | Model | Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00 | | Cores | 16 physical cores, 16 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 512, 32768) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 48 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC runs at constant rate (invariant from clock frequency) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 3 months ago

Benchmark Results

main 21e33599f79d7f... main/21e33599f79d7f...
assemble/basic bilinear/mass matrix 17.2 ± 4.2 ms 16 ± 1.2 ms 1.08
assemble/basic bilinear/stiffness matrix 0.0808 ± 0.0043 s 0.0819 ± 0.0034 s 0.987
assemble/poisson DG/AffineFESystem 0.0552 ± 0.0073 s 0.0537 ± 0.0073 s 1.03
assemble/poisson DG/a_Γ(u, v) 0.0382 ± 0.0066 s 0.0382 ± 0.0065 s 1
assemble/poisson DG/a_Γb(u, v) 7.42 ± 0.13 ms 7.45 ± 0.13 ms 0.996
assemble/poisson DG/a_Ω(u, v) 7.9 ± 0.027 ms 7.76 ± 0.011 ms 1.02
assemble/poisson DG/l_Γb(v) 0.122 ± 0.043 ms 0.119 ± 0.029 ms 1.03
assemble/poisson DG/l_Ω(v) 12.7 ± 0.26 μs 12.7 ± 0.18 μs 1
covo/Quad/explicit_step 0.0853 ± 0.0013 s 0.0817 ± 0.0012 s 1.04
covo/Quad/integral_surface 0.0532 ± 0.00044 s 0.0515 ± 0.00026 s 1.03
covo/Quad/integral_volume 20.2 ± 0.071 ms 20.3 ± 0.07 ms 0.997
covo/TriQuad/explicit_step 0.428 ± 0.017 s 0.401 ± 0.028 s 1.07
covo/TriQuad/integral_surface 0.316 ± 0.0057 s 0.308 ± 0.0029 s 1.03
covo/TriQuad/integral_volume 0.0786 ± 0.0057 s 0.0762 ± 0.0032 s 1.03
entities/edges2nodes 1.56 ± 0.01 ns 1.56 ± 0.01 ns 1
entities/nedges 1.55 ± 0.01 ns 1.56 ± 0.01 ns 0.994
entities/nnodes 3.11 ± 0.01 ns 2.79 ± 0.01 ns 1.11
entities/nodes 1.55 ± 0.01 ns 1.55 ± 0.01 ns 1
mesh/todo 1.55 ± 0.01 ns 1.56 ± 0.01 ns 0.994
time_to_load 3.24 ± 0.015 s 3.18 ± 0.0085 s 1.02

Benchmark Plots

A plot of the benchmark results have been uploaded as an artifact to the workflow run for this PR. Go to "Actions"->"Benchmark a pull request"->[the most recent run]->"Artifacts" (at the bottom).