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Issue with anaconda installation #24

Open bja43 opened 7 years ago

bja43 commented 7 years ago

The anaconda install instructions did not work for me perhaps because python-javabridge is imported instead of javabridge. Here is what I ran (in quotes):

"~/ conda install -c https://conda.anaconda.org/chirayu pycausal"

and here is the output (in quotes):

"Fetching package metadata ........... Solving package specifications:

PackageNotFoundError: Dependency missing in current linux-64 channels:

Close matches found; did you mean one of these?

python-javabridge: javabridge"
chirayukong commented 7 years ago

Yep, they are the same thing. Used to be different names between one in conda and another in PyPI repo. I'll upate the README.md.

chiroptical commented 7 years ago

This doesn't appear to be fixed in the Anaconda Cloud linux-64 channel.

sh-4.4# conda install javabridge
Fetching package metadata .........
Solving package specifications: .

Package plan for installation in environment /usr/local/miniconda:

The following NEW packages will be INSTALLED:

    javabridge: 1.0.14-py27_0
    mkl:        2017.0.1-0   
    numpy:      1.13.0-py27_0

The following packages will be UPDATED:

    conda:      4.3.21-py27_0 --> 4.3.22-py27_0

Proceed ([y]/n)? 

mkl-2017.0.1-0 100% |##############################################################################################################| Time: 0:00:11  11.55 MB/s
numpy-1.13.0-p 100% |##############################################################################################################| Time: 0:00:00  11.68 MB/s
javabridge-1.0 100% |##############################################################################################################| Time: 0:00:00  11.26 MB/s
conda-4.3.22-p 100% |##############################################################################################################| Time: 0:00:00  11.84 MB/s
sh-4.4# conda install -c https://conda.anaconda.org/chirayu pycausal 
Fetching package metadata ...........
Solving package specifications: 

PackageNotFoundError: Dependency missing in current linux-64 channels: 
  - pycausal -> python-javabridge

Close matches found; did you mean one of these?

    python-javabridge: javabridge
chirayukong commented 7 years ago

Thanks, Bryan. Seems I need to create a package from the clean machine with no previous python-javabridge or javabridge installation. In the mean time, could you instead install it from the source code?

Kong

On Fri, Jun 16, 2017 at 3:05 PM, Barry Moore notifications@github.com wrote:

This doesn't appear to be fixed in the Anaconda Cloud linux-64 channel.

sh-4.4# conda install javabridge Fetching package metadata ......... Solving package specifications: .

Package plan for installation in environment /usr/local/miniconda:

The following NEW packages will be INSTALLED:

javabridge: 1.0.14-py27_0
mkl:        2017.0.1-0
numpy:      1.13.0-py27_0

The following packages will be UPDATED:

conda:      4.3.21-py27_0 --> 4.3.22-py27_0

Proceed ([y]/n)?

mkl-2017.0.1-0 100% |##############################################################################################################| Time: 0:00:11 11.55 MB/s numpy-1.13.0-p 100% |##############################################################################################################| Time: 0:00:00 11.68 MB/s javabridge-1.0 100% |##############################################################################################################| Time: 0:00:00 11.26 MB/s conda-4.3.22-p 100% |##############################################################################################################| Time: 0:00:00 11.84 MB/s sh-4.4# conda install -c https://conda.anaconda.org/chirayu pycausal Fetching package metadata ........... Solving package specifications:

PackageNotFoundError: Dependency missing in current linux-64 channels:

  • pycausal -> python-javabridge

Close matches found; did you mean one of these?

python-javabridge: javabridge

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