BEAUti-generated GLM analyses no longer run

[GuyBaele]

The most recent change to BinomialLikelihoodParser generates the error below upon running a GLM XML file (generated by BEAUti). Additionally, older XML files with a GLM no longer run using the latest BEAST version.

SEVERE: Parsing error - poorly formed BEAST file, Dengue997_s3_AMVN_Mus_GLM_avmvn.xml: Error parsing '' element with id, 'null': Trials dimension (1) must equal counts dimension (2)

Error thrown at: dr.inferencexml.distribution.BinomialLikelihoodParser.parseXMLObject(BinomialLikelihoodParser.java:86)

[rambaut]

Could you post the relevant XML snippits?

[GuyBaele]

The problem lies with parsing the following prior XML bit:

            <binomialLikelihood>
                <proportion>
                    <parameter value="0.2928932188134524"/>
                </proportion>
                <trials>
                    <parameter value="1.0"/>
                </trials>
                <counts>
                    <parameter idref="location.coefIndicators"/>
                </counts>
            </binomialLikelihood>

Do you need me to e-mail you a full XML file?

[rambaut]

Yes. Please.

[rambaut]

I can see what the issue is but not what the correct behaviour should be just yet.