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Bayesian Evolutionary Analysis Sampling Trees
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ASYMQUADModel parsing error #1084

Closed tjhaxton closed 7 months ago

tjhaxton commented 4 years ago

I am attempting to conduct coalescence analysis with BEAST v1.10 and BEAUti v1.10.4 using microsatellite genotypes for four fish populations and ran into an issue. I tried the same approach with the example microsatellite data and experienced the same problem:

BEAST has terminated with an error. Please select QUIT from the menu. Jun 2, 2020 4:45:39 PM dr.app.beast.BeastMain SEVERE: Parsing error - poorly formed BEAST file, microsatellite_data.xml: Object with idref=ASYMQUADModel has not been parsed.

Error thrown at: dr.xml.XMLParser.convert(Unknown Source)

microsatellite_data.xml.txt

Thanks for any advice

T.

mostinn commented 1 year ago

T, Did you manage to solve the ASYMQUADModel issue?

Thanks in advance, m

tjhaxton commented 1 year ago

I had to use the previous version as I could not get the new version to work.

T.

Tim Haxton Aquatic Research and Monitoring Section 705-760-1774

From: Magnus Stefansson @.> Sent: August 29, 2023 10:15 AM To: beast-dev/beast-mcmc @.> Cc: Haxton, Tim (MNRF) @.>; Author @.> Subject: Re: [beast-dev/beast-mcmc] ASYMQUADModel parsing error (#1084)

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T, Did you manage to solve the ASYMQUADModel issue?

Thanks in advance, m

- Reply to this email directly, view it on GitHubhttps://github.com/beast-dev/beast-mcmc/issues/1084#issuecomment-1697528814, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AP2C3DXCESUFTZT6YK2U4ELXXX2NFANCNFSM4NRCL5QQ. You are receiving this because you authored the thread.Message ID: @.**@.>>

rambaut commented 7 months ago

Microsatellite data is no longer supported in BEAUti and bugs in v1.10.4 will not be fixed.