beast-dev / beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees
http://beast.community
GNU Lesser General Public License v2.1
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Using the AutocorrelatedClock #1101

Open sebastianduchene opened 3 years ago

sebastianduchene commented 3 years ago

Hello BEAST1 developers,

I was trying to run the Autocorrelated clock from this example: https://github.com/beast-dev/beast-mcmc/blob/master/examples/TestXML/testAutocorrelatedRelaxedClock.xml

However, it only runs on 1.8.4, but not on 1.10. I get an error that says:

Object with idref=branchRates has not been parsed.

Is ACLikelihood deprecated? I couldn't set it up through AutoCorrelatedBranchRatesDistribution. Could you please provide an updated XML file or point me in the right direction for setting up the branchRates in the xml. Thanks!