compile-all:
[javac] Compiling 765 source files to /Users/simon/Desktop/0/1/group/beast-mcmc/build
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/inference/multidimensionalscaling/NativeMDSSingleton.java:126: error: missing return statement
[javac] }
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/inference/parallel/MPILikelihoodRunner.java:116: warning: [removal] finalize() in Object has been deprecated and marked for removal
[javac] public void finalize() {
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/indel/NativeTreeLikelihood.java:141: warning: [removal] finalize() in Object has been deprecated and marked for removal
[javac] protected void finalize() throws Throwable {
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/indel/NativeTreeLikelihood.java:146: warning: [removal] finalize() in Object has been deprecated and marked for removal
[javac] super.finalize();
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/AbstractLikelihoodCore.java:122: warning: [removal] finalize() in Object has been deprecated and marked for removal
[javac] public void finalize() throws java.lang.Throwable {
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/AbstractLikelihoodCore.java:123: warning: [removal] finalize() in Object has been deprecated and marked for removal
[javac] super.finalize();
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/AdvancedTreeLikelihood.java:418: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] (deltaTips.size() == 0 || deltaTips.contains(new Integer(node.getNumber())))) {
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/ArbitraryPrecisionLikelihoodCore.java:121: warning: [removal] finalize() in Object has been deprecated and marked for removal
[javac] public void finalize() throws java.lang.Throwable {
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/ArbitraryPrecisionLikelihoodCore.java:122: warning: [removal] finalize() in Object has been deprecated and marked for removal
[javac] super.finalize();
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/xml/UserInput.java:83: warning: [removal] Double(double) in Double has been deprecated and marked for removal
[javac] return new Double(input.readDouble());
[javac] ^
[javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/xml/UserInput.java:121: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
[javac] return new Integer(input.readInteger());
[javac] ^
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 1 error
[javac] 14 warnings
BUILD FAILED
/Users/simon/Desktop/0/1/group/beast-mcmc/build.xml:78: Compile failed; see the compiler error output for details.
ant Buildfile: /Users/simon/Desktop/0/1/group/beast-mcmc/build.xml
init: [echo] BEAST: /Users/simon/Desktop/0/1/group/beast-mcmc/build.xml
compile-all: [javac] Compiling 765 source files to /Users/simon/Desktop/0/1/group/beast-mcmc/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/inference/multidimensionalscaling/NativeMDSSingleton.java:126: error: missing return statement [javac] } [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/inference/parallel/MPILikelihoodRunner.java:116: warning: [removal] finalize() in Object has been deprecated and marked for removal [javac] public void finalize() { [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/indel/NativeTreeLikelihood.java:141: warning: [removal] finalize() in Object has been deprecated and marked for removal [javac] protected void finalize() throws Throwable { [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/indel/NativeTreeLikelihood.java:146: warning: [removal] finalize() in Object has been deprecated and marked for removal [javac] super.finalize(); [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/AbstractLikelihoodCore.java:122: warning: [removal] finalize() in Object has been deprecated and marked for removal [javac] public void finalize() throws java.lang.Throwable { [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/AbstractLikelihoodCore.java:123: warning: [removal] finalize() in Object has been deprecated and marked for removal [javac] super.finalize(); [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/AdvancedTreeLikelihood.java:418: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal [javac] (deltaTips.size() == 0 || deltaTips.contains(new Integer(node.getNumber())))) { [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/ArbitraryPrecisionLikelihoodCore.java:121: warning: [removal] finalize() in Object has been deprecated and marked for removal [javac] public void finalize() throws java.lang.Throwable { [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/oldevomodel/treelikelihood/ArbitraryPrecisionLikelihoodCore.java:122: warning: [removal] finalize() in Object has been deprecated and marked for removal [javac] super.finalize(); [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/xml/UserInput.java:83: warning: [removal] Double(double) in Double has been deprecated and marked for removal [javac] return new Double(input.readDouble()); [javac] ^ [javac] /Users/simon/Desktop/0/1/group/beast-mcmc/src/dr/xml/UserInput.java:121: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal [javac] return new Integer(input.readInteger()); [javac] ^ [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 1 error [javac] 14 warnings
BUILD FAILED /Users/simon/Desktop/0/1/group/beast-mcmc/build.xml:78: Compile failed; see the compiler error output for details.
Total time: 6 seconds