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beast-dev / beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees
http://beast.community
GNU Lesser General Public License v2.1
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Exception in thread "Thread-0" java.lang.RuntimeException: An error was encountered. Terminating BEAST #1163

Closed ypchan closed 1 year ago

ypchan commented 1 year ago

Dear authors,

I am running beast v1.10.4 Prerelease #bc6cbd9, but it stop with a error:

Exception in thread "Thread-0" java.lang.RuntimeException: An error was encountered. Terminating BEAST
    at dr.util.ErrorLogHandler.publish(Unknown Source)
    at java.logging/java.util.logging.Logger.log(Logger.java:979)
    at java.logging/java.util.logging.Logger.doLog(Logger.java:1006)
    at java.logging/java.util.logging.Logger.log(Logger.java:1029)
    at java.logging/java.util.logging.Logger.severe(Logger.java:1776)
    at dr.inference.markovchain.MarkovChain.runChain(Unknown Source)
    at dr.inference.mcmc.MCMC.chain(Unknown Source)
    at dr.inference.mcmc.MCMC.run(Unknown Source)
    at java.base/java.lang.Thread.run(Thread.java:829)
0.908 seconds

I checked the XML file, and it is ok. I don't know how to bug this. I attached the xml file. relaxed_clock.xml.txt

Kind regards, Yanpeng

xji3 commented 1 year ago

@ypchan Hi Yanpeng, I couldn't replicate your error, the xml just runs fine on my machine. Could you please provide more details about your setup, for example, operating system, java version, beagle version and if you are running BEAST from command line?