Refactor the BIA retrieval tool - Githubissues

beatrizserrano / BH2024-project17

Repository to manage project 17 at the BioHackathon Europe 2024

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Refactor the BIA retrieval tool #11

Open kostrykin opened 2 months ago

kostrykin commented 2 months ago

There is a tool for downloading images from the Bioimage Archive: https://imaging.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/bia_download/bia_download/0.1.0+galaxy0

The UI of this tool needs some love:

[ ] The "storage mode" can only be nfs or fire, this should thus be a dropdown field.
[ ] The help text of the field should say when to use which of the two options.
[ ] The "path of accession" field is unclear — what does a user need to put in here? Add a help text.
[ ] Why are both fields optional? Is that correct?
[ ] Is it possible to retrieve only part of a dataset?

Optional:

[ ] If it is possible to retrieve only part of a dataset, this should be implemented.
[ ] Migrate to the alpha version of the API? Stable API could be available by now (Beatriz should have further info).