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beatrizserrano / galaxy-image-community

Repository to manage project 17 at the BioHackathon Europe 2024
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Gather list of tools #1

Closed kostrykin closed 3 weeks ago

kostrykin commented 4 months ago

Gather the list of tools available.

It should be possible to retrieve the list directly from the Galaxy CoDEX: https://github.com/galaxyproject/galaxy_codex

If they have fixed the CI by now: https://github.com/galaxyproject/galaxy_codex/pull/152

We had a similar list of tools gathered at the BioHackathon Europe 2023, which by now is out of date: https://docs.google.com/spreadsheets/d/1bUJb9mmX7JfGMaK9gQJN-0AKrd0Hb0kq79X637lYVVk/edit#gid=165841450

beatrizserrano commented 2 months ago

We should update the list of tools in the tool panel at https://imaging.usegalaxy.eu/ There's something wrong with the list on the tool panel, I remember more tools being listed there. Also, we should consider renaming the category from "Imaging" to "Image Analysis" or "Image Processing" if that's possible.

kostrykin commented 3 weeks ago

Here is the most recent list of tools from the Galaxy Codex project: https://github.com/galaxyproject/galaxy_codex/blob/1da03e6728436c2644706191d035b103d885a36c/communities/imaging/resources/tools.tsv

To me it looks up to date (at least as up to date as of Sept 27).

I think we can close this issue then.