beauchamplab / rave

For all RAVE info, including installation instructions, visit
https://beauchamplab.github.io/rave
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During install, pak subprocess error type 'binary' is not supported #54

Closed mdefende closed 9 months ago

mdefende commented 9 months ago

Hi, I'm following the installation instructions found on the OpenWetWare site but am running into the following error

ravemanager::install()
Current `ravemanager` version: 1.0.33
Installing RAVE... This might take a while...
Package [ravetools] (binary) is up-to-date. Skipping
Package [filearray] (binary) is up-to-date. Skipping
Package [shidashi] (binary) is up-to-date. Skipping
Package [rpymat] (binary) is up-to-date. Skipping
Package [dipsaus] (binary) is up-to-date. Skipping
Package [threeBrain] (binary) is up-to-date. Skipping
Package [raveio] (binary) is up-to-date. Skipping
Package [ravedash] (binary) is up-to-date. Skipping
Package [rave] (binary) is up-to-date. Skipping
Package [rutabaga] (binary) is up-to-date. Skipping
v Loading metadata database ... done
Try the native installation methods.                                                       
[Original Error]: error in pak subprocess
================================================================================
# ---- RAVE installer detects the following error(s): --------
type 'binary' is not supported on this platform

I assume type 'binary' is referring to the installation method for some package, but I'm not sure which one. I'm running R version 4.2.0 on RHEL 7. Let me know what other information you need. Thanks

dipterix commented 9 months ago

Hi @mdefende,

Sorry for the late reply. In theory it should work on Linux. There might be some configurations not set properly on RHEL 7.

I have made some fixes trying to solve this issue. Would you mind retry the installation from step2?

install.packages('ravemanager', repos = 'https://rave-ieeg.r-universe.dev')

Currently, I don't have access to any other RHEL servers. If the above fix does not solve the issue, please feel free to schedule a zoom with me dipterix at upenn.edu. I'm more than happy to help.

mdefende commented 9 months ago

Thanks, this fixed it. I was able to do a full installation using the current instructions. I appreciate the help