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beauchamplab / rave

For all RAVE info, including installation instructions, visit
https://beauchamplab.github.io/rave
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Request function to export Voltage Diagnostic Plots #9

Closed EANesbitt closed 3 years ago

EANesbitt commented 5 years ago

In rave_preprocess, could you make a function that would export the graphs of the electrode diagnostics as a PNG file for quicker viewing?

dipterix commented 5 years ago

Function export_diagnose_voltage is implemented. Please update the package and try ?export_diagnose_voltage or help("export_diagnose_voltage") to view the doc.

To export those images to a file, please do as follows: (let's say the subject is project_1/sub_1 and it has 1-10 electrodes)

(skip 1, and 2 if you have done so)

  1. First, please run import the subject. a) Open R, import rave by library(rave) b) Open preprocess GUI by entering rave_preprocess() c) Create subject if not done, or find the subject if imported, specify sample rate, electrodes, as well as blocks, update subject
  2. go to "Notch filter", apply notch filter to all channels, then exit preprocessing module
  3. Then, in R console, enter export_diagnose_voltage("project_1/sub_1", electrodes = 1:10)