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bebatut / PylProtPredictor

Prediction of PYL proteins
http://bebatut.fr/PylProtPredictor/
Apache License 2.0
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Remove next CDS limitation #21

Closed bebatut closed 6 years ago

bebatut commented 6 years ago

In the previous version, the possible new ends had to be before the next CDS on the strand. But with this limitation, half of the potential PYL proteins (on candidatus_methanomethylophilus_alvus_Mx1201) are not found and among them some "real" PYL proteins

So in this PR, I removed this limitation and I cleaned the code of related parameters that become useless

codecov[bot] commented 6 years ago

Codecov Report

Merging #21 into master will decrease coverage by 0.03%. The diff coverage is 87.5%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #21      +/-   ##
==========================================
- Coverage   99.61%   99.58%   -0.04%     
==========================================
  Files           6        6              
  Lines         526      483      -43     
==========================================
- Hits          524      481      -43     
  Misses          2        2
Impacted Files Coverage Δ
pylprotpredictor/predict.py 100% <100%> (ø) :arrow_up:
pylprotpredictor/cds.py 99.3% <80%> (-0.08%) :arrow_down:

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