Phylogenomic tool - Githubissues

becavin-lab / bacnet

BACNET is a Java based platform to develop website for multi-omics analysis

GNU General Public License v3.0

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Phylogenomic tool #11

Closed drbecavin closed 5 years ago

drbecavin commented 5 years ago

Add a tool to create phylogenomic tree

Using IQTree (http://www.iqtree.org/) we need to generate 'PhylogenyGenomes.svg' (also 'Phylogenomic.PHYLO_GENOME_SVG')

Implement IQTree
Run it in 'GenomesCreation'
Extract Phylogenomic.PHYLO_GENOME_SVG file

drbecavin commented 5 years ago

Add all external scripts for Phylogenomic tree creation #31 PhylogenomicsCreation.createPhylogenomicFigure(String logs) created Method to create a Phylogenomic figure using: JolyTree - https://gitlab.pasteur.fr/GIPhy/JolyTree for alignment and tree construction FigTree for Drawign Phylogenomic tree

drbecavin commented 5 years ago

Finished in issue #40

drbecavin commented 4 years ago

Modified in #49