Add Systems Biology tools

becavin-lab / bacnet

BACNET is a Java based platform to develop website for multi-omics analysis

GNU General Public License v3.0

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Add Systems Biology tools #13

Open drbecavin opened 5 years ago

drbecavin commented 5 years ago

These tools for co-expression network construction exists already but only for Listeriomics datasets. It needs to be generalized.

Need to use bacnet.scripts.listeriomics.SystemsBiologyListeriomics and create bacnet.scripts.database.SystemsBiologyCreation

drbecavin commented 5 years ago

Added tools for coexpression network creation. Add interface in bacnet.rap.setup for that. Issue #29

drbecavin commented 5 years ago

Need to check : Expression.summarize(expTemp, genome); in TranscriptomesCreation.createLogfcTranscriptomeTable(bioConds, logs, true); Not sure that AllDataType_Listeria monocytogenes EGD-e.excel is created without bugs