Open drbecavin opened 5 years ago
For the moment only coding sequences, tRNA and rRNA are included. If no CDS, exon is available the element is not included. We should include:
Test on eukaryotes with exon, intron and specific stuff
Modify specifically: GFFNCBIReader.addSequences(LinkedHashMap<String, ChromosomeBacteriaSequence> chromosomes,HashMap<String, ArrayList<FeatureI>> listLocusTag) In package bacnet.reader
GFFNCBIReader.addSequences(LinkedHashMap<String, ChromosomeBacteriaSequence> chromosomes,HashMap<String, ArrayList<FeatureI>> listLocusTag)
package bacnet.reader
Specifically if only one GFF line is available per feature ! Manage both cases
For the moment only coding sequences, tRNA and rRNA are included. If no CDS, exon is available the element is not included. We should include:
Test on eukaryotes with exon, intron and specific stuff
Modify specifically:
GFFNCBIReader.addSequences(LinkedHashMap<String, ChromosomeBacteriaSequence> chromosomes,HashMap<String, ArrayList<FeatureI>> listLocusTag)Inpackage bacnet.readerSpecifically if only one GFF line is available per feature ! Manage both cases