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beckyjackson / synbio-alignments

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some substep of make porepare failing #4

Open turbomam opened 3 years ago

turbomam commented 3 years ago 
mkdir -p build
python3 src/pick_genomes.py data/ANI build/reference_genomes.csv
mkdir -p data/reference_genomes
sshpass -p PASSWORD scp -T mam@merlot.lbl.gov:"" data/reference_genomes

scp: .: not a regular file make: *** [Makefile:34: mirror_genomes] Error 1

turbomam commented 3 years ago

completes successfully

# 3. Select best match to unicycler_assembly
build/reference_genomes.csv: src/pick_genomes.py | build 
    python3 $< data/ANI $@
turbomam commented 3 years ago

build/reference_genomes.csv empty