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bedapub / besca

BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
https://bedapub.github.io/besca/
GNU General Public License v3.0
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Allow flavor selection in `bc.st.highly_variable_genes()` #320

Open llumdi opened 10 months ago

llumdi commented 10 months ago

Hi, After Samuel Rutz's talk today at the single cell meeting, I think it would be good to incorporate the flavor param from scanpy's function (instead of only allowing the default 'seurat'). https://scanpy.readthedocs.io/en/stable/generated/scanpy.pp.highly_variable_genes.html

I would also suggest setting the default flavor to seurat_v3 Thanks, Llucia