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bedapub
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besca
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
https://bedapub.github.io/besca/
GNU General Public License v3.0
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`use_raw=False` not working in bc.tl.sig.combined_signature_score( )
#312
llumdi
opened
1 year ago
0
Adjusted HVG with batch selection
#311
swalpe
closed
1 year ago
0
309 re uploaded crispr data set to zenodo
#310
kohleman
closed
1 year ago
0
re-uploaded Crispr data set to zenodo
#309
kohleman
closed
1 year ago
0
Bump scipy from 1.8.0 to 1.10.0 in /devtools
#308
dependabot[bot]
closed
1 year ago
0
Bump grpcio from 1.44.0 to 1.53.0 in /devtools
#307
dependabot[bot]
closed
1 year ago
0
Use `cnamesDBlabel` instead of `cnames` to achieve consistency
#306
matchy233
closed
1 year ago
0
Update requirements.txt
#305
kohleman
closed
1 year ago
0
Update requirements.txt
#304
kohleman
closed
1 year ago
0
Update requirements.txt
#303
kohleman
closed
1 year ago
0
Fix/doctest
#302
kohleman
closed
1 year ago
0
Wrongly use `cnames` instead of `cnamesDBlabel` for annotation after reclustering
#301
matchy233
closed
1 year ago
0
Fix empty `levsk` while reading annotation config for pandas 2.0
#300
matchy233
closed
1 year ago
0
`IndexError: list index out of range` while running the cell annotation workbook
#299
matchy233
closed
1 year ago
2
env yaml file
#298
schmucr1
opened
1 year ago
2
fixed small bug in export pseudobulk raw
#297
swalpe
closed
1 year ago
0
Bump tornado from 6.1 to 6.3.2 in /devtools
#296
dependabot[bot]
closed
1 year ago
2
Bump requests from 2.27.1 to 2.31.0 in /devtools
#295
dependabot[bot]
closed
1 year ago
1
Bump flask from 2.0.3 to 2.3.2 in /devtools
#294
dependabot[bot]
closed
1 year ago
1
Added keratinocyte and melanocyte sig and fixed neutrophil #289
#293
swalpe
closed
1 year ago
0
20230417 david stdwf format
#292
Accio
closed
10 months ago
2
Update CellTypes_v1.tsv
#291
swalpe
closed
1 year ago
0
Added B myelo cell doublet as cell type
#290
swalpe
closed
1 year ago
0
Error in neutrophil signature
#289
llumdi
closed
1 year ago
1
Fixed split_gene_expression bug related to figsize
#288
swalpe
closed
1 year ago
0
Crispr
#287
Kladise
closed
1 year ago
0
BIOINFO-1939: small bug fix
#286
kohleman
closed
1 year ago
0
Crispr Quality Control functions Besca
#285
kohleman
closed
1 year ago
0
Bump werkzeug from 2.0.3 to 2.2.3 in /devtools
#284
dependabot[bot]
closed
1 year ago
0
Bump ipython from 8.1.1 to 8.10.0 in /devtools
#283
dependabot[bot]
closed
1 year ago
0
Update doc-tests.yml
#282
paulgeser
closed
1 year ago
0
#280 fixed riverplot height and width
#281
kohleman
closed
1 year ago
0
Riverplot: Figure height and width not usable
#280
kohleman
closed
1 year ago
0
Update doc-tests.yml
#279
kohleman
closed
1 year ago
0
Bump torch from 1.10.2 to 1.13.1 in /devtools
#278
dependabot[bot]
closed
1 year ago
0
Bump future from 0.18.2 to 0.18.3 in /devtools
#277
dependabot[bot]
closed
1 year ago
0
Bump oauthlib from 3.2.1 to 3.2.2 in /devtools
#276
dependabot[bot]
closed
1 year ago
0
Pseudobulk from raw counts
#275
hatjek
closed
1 year ago
0
Update _export.py
#274
hatjek
closed
1 year ago
1
Small fix in cell annotation workbook as per #271
#273
swalpe
closed
1 year ago
0
Storing public data sets in installation directory is problematic
#272
schmucr1
opened
1 year ago
0
KeyError: 'base' when using bc.tl.dge.get_de() or bc.st.additional_labeling()
#271
llumdi
opened
1 year ago
3
Bump certifi from 2021.10.8 to 2022.12.7 in /devtools
#270
dependabot[bot]
closed
1 year ago
0
Installation fail: unable to resolve dependencies
#269
jasonleongbio
closed
1 year ago
2
Bump jupyter-core from 4.9.2 to 4.11.2 in /devtools
#268
dependabot[bot]
closed
1 year ago
1
CellTypes_v1.tsv
#267
llumdi
closed
1 year ago
0
Bump pillow from 9.0.1 to 9.3.0 in /devtools
#266
dependabot[bot]
closed
1 year ago
0
Remove duplicated log messages
#265
kohleman
opened
1 year ago
2
Update _read.py
#264
hatjek
closed
1 year ago
0
#262 modified regex to accept '-' in gene names
#263
kohleman
closed
1 year ago
0
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