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bede / hostile

Precise host read removal
MIT License
74 stars 5 forks source link

BAM ingest #1

Closed bede closed 8 months ago

bede commented 1 year ago

Necessary to break streaming, prepend to decontam command?

TemporaryDirectory?

bede commented 1 year ago

BAM could be streamed for single reads but FIFOs are unreliable for paired file input to Minimap2 due to multiple passes of input files? Review later