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bede / kindel

Indel-aware consensus from aligned BAMs
GNU General Public License v3.0
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Wrapper for easy reference guided contiguation + consensus of assemblies #10

Open bede opened 6 years ago

bede commented 6 years ago

Depend on aligner? Segemehl, BBMap? Graphmap?

bede commented 4 years ago

Use minimap2 mappy bindings? https://github.com/lh3/minimap2/tree/master/python

bede commented 3 years ago

With snakemake?