Handle missing LN fields in @SQ headers

bede / kindel

Indel-aware consensus from aligned BAMs

GNU General Public License v3.0

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Open bede opened 7 years ago

bede commented 7 years ago

Accept reference as an optional argument and use to calculate length in absense of LN field

Throw exception with missing LN field and no reference

bede commented 5 years ago

Would probably make sense to infer from a user-supplied reference rather than work this put directly from bam