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beiko-lab / gengis

GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.
GNU General Public License v3.0
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MGRast #37

Closed akeddy closed 11 years ago

akeddy commented 11 years ago

some studies seem to fail to download. Something to do with parsing the JSON file, they seem to be missing expected keys.

akeddy commented 11 years ago

Issue stemmed from MG-RAST returning empty studies. This was verified using study mgm4477253.3. Specific error given by MGRast was:

ERROR: invalid combination: requesting protein source annotations with Amplicon data sets

now any time the key "ERROR" is returned the plugin tells the user to consult with mg rast over what's going on and quits.