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belbio / bel_resources

BEL resources and tools for namespaces, annotations, orthologs, taxonomy, etc and tool
https://bel-resources.rtfd.io
Apache License 2.0
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Refactor belns/belanno term scripts #16

Open wshayes opened 6 years ago

wshayes commented 6 years ago

belns and belanno converters openbel_annotations.py and openbel_namespaces.py should be converted to use source databases directly. Instead of using the OpenBEL namespace and annotation format files, create individual term scripts to add full functionality to these namespaces since the OpenBEL formatted files are missing things like equivalences.

wshayes commented 6 years ago

Priority list: Uberon, CL, CLO, EFO, SFAM, ECO

Plan on obsoleting SCHEM, SDIS, SCOMP

wshayes commented 6 years ago

Uberon needs to have the entity_types = ['Location'] so it can be used in the loc() modifier.