belbio / bel_resources

BEL resources and tools for namespaces, annotations, orthologs, taxonomy, etc and tool
https://bel-resources.rtfd.io
Apache License 2.0
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MeSH namespace changes #62

Closed wshayes closed 6 years ago

wshayes commented 6 years ago

Can the MeSH food and beverages tree [J02] get brought in as abundances? (is there a place I can log general namespace issues/requests?) Many of these terms like “Probiotics” and “Wine” are in [G07] Physiological Phenomena, so are supported as biological process terms, but not as abundances.

wshayes commented 6 years ago

I've added J02 as an Abundance type which looks like it includes Probiotics and Wine as well:

RECTYPE = D MH = Probiotics AQ = AD AE AN CH CL CS EC HI IP ME PD PK PO RE SD ST TO TU ENTRY = Probiotic|T007|NON|EQV|NLM (2017)|150917|abcdef MN = G07.203.300.456.500 MN = J02.500.456.500 MH_TH = NLM (1998) ST = T007 AN = Do not confuse with PREBIOTICS MS = Live microbial DIETARY SUPPLEMENTS which beneficially affect the host animal by improving its intestinal microbial balance. Antibiotics and other related compounds are not included in this definition. In humans, lactobacilli are commonly used as probiotics, either as single species or in mixed culture with other bacteria. Other genera that have been used are bifidobacteria and streptococci. (J. Nutr. 1995;125:1401-12) PM = 98 HN = 98 MR = 20151009 DA = 19970620 DC = 1 DX = 19980101 UI = D019936

RECTYPE = D MH = Wine AQ = AE AN CL EC HI MI PO PS RE SD SN ST TO UT VI ENTRY = Wines MN = G07.203.100.100.900 MN = G07.203.200.887 MN = J02.200.100.900 MN = J02.350.887 MH_TH = NLM (1966) ST = T168 MS = Fermented juice of fresh grapes or of other fruit or plant products used as a beverage. MR = 20170414 DA = 19990101 DC = 1 DX = 19660101 UI = D014920

wshayes commented 6 years ago

Completed - Natalie confirmed.