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beliveau-lab / OligoMiner

Genome-scale design tool for oligo hybridization probes
MIT License
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Can a multiple record fasta be used as input? #2

Closed pinkvirus3 closed 7 years ago

pinkvirus3 commented 7 years ago

The blockParse.py script only runs through the first record in the .fasta. Is it possible to give as input a .fasta with multiple records, creating a .fastq file with probes for multiple regions?

Thanks

brianbeliveau commented 7 years ago

Hello,

blockParse does not currently support multiple FASTA records in the same input file. To run blockParse on multiple regions at once, we would recommend to either write a simple 'handler' script to coordinate the runs or to take advantage of a utility such as Snakemake.