Open alexlenail opened 7 months ago
Hi,
Unfortunately NUPACK is in the process of moving to a subscription-only model, and as a result conda/pypi support has been phased out. You will need to compile and valid a local install of NUPACK in order to run structureCheck.py
Please test the NUPACK executables using bash. They should work after successful compilation, provided they are in your path.
Hi alexlenail,
You added those executables to your $PATH. But maybe you did not add NUPACKHOME path. Please export NUPACKHOME=/path/to/nupack Then test NUPACK by using: prob Enter sequence: Any sequence like AAAATT Enter structure: ...... If it worked then all will be fine.
Just sloved
Hi, I tried to do a fresh install from environment.yml on my M1 mac, but ran into a bug.
I made the environment without nupack, and tried to install nupack subsequently, but got another error.
nupack needed to be installed separately. I registered for an account at nupack.org, and downloaded and untarred nupack 3.0.6.
I did
make
in the root directory as is called for by the NUPACK 3.0 User Guide.It appears that 3.0.6 has no python package, only executables. I added those executables to my
$PATH
.I then ran
structureCheck.py
with the example file, with the same command as is in the README.