Error in processing Bismark cytosine reports

ben-laufer / DMRichR

A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

https://www.benlaufer.com/DMRichR/

MIT License

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Error in processing Bismark cytosine reports #87

Closed MinS1 closed 1 week ago

MinS1 commented 3 weeks ago

Hi, I got this error in the processBismark function while running DM.R:

expr: syntax error Warning message: replacing previous import 'Matrix::det' by 'SparseM::det' when loading 'sigFeature' Error in bsseq::read.bismark(files = files, rmZeroCov = FALSE, strandCollapse = TRUE, : 'files' cannot have duplicate entries. Calls: -> -> Execution halted

However, I have already confirmed that my files are not duplicated. How can I resolve this issue? I would appreciate your help. Thank you!

Shi

MinS1 commented 3 weeks ago

@ben-laufer