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ben-silke / biol3209

This repo contains the code for the undertaking of the biol3209 subject.
BSD 3-Clause "New" or "Revised" License
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meeting notes 03082022 #1

Closed ben-silke closed 2 years ago

ben-silke commented 2 years ago

Type of genes:

Bacteria only;

no introns/ exons

Two component system:

amino acid protein signatures:

limitations of JustOrthologs

issue: soil data from gavin/ gut microbiome collection

issue: project outline - what how and why

Synopsis: meeting/ what are the issues

Issue: what current approaches are used for gene identification Protein family signatures: How are these identified;

Gene content:

Assembly;

MetaGeneMarker - look at this software.

handling of synthetic sequencing errors - do Algorithms exist for handling sequence errors for long read technology.

Typical length 230 aa long; 750bp long.

ben-silke commented 2 years ago

Close issue as this is means of tracking only.